Faculty Profile

Dr. Safee Ullah Chaudhary

Assistant Professor

Department Of Biology

Safee Ullah Chaudhary received his B.S. in computer systems engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He spent the next four years at Ultimus Inc (HQ NC) serving in the software development group. He was the team leader for design and development of Ultimus XML Formula Engine. He then proceeded to South Korea for graduate studies and obtained an M.S. and Ph.D. in 2008 and 2013, respectively. His doctoral research at the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), was focused on computational modelling of multiscale cancer systems biology. He took an agents-based (multi-agent) approach to model tumorigenesis and uncovered the role of cell death in Warburg Effect. This work also led to the development of Electronic Cancer System (ELECANS), which is a next-generation modelling platform for applications in cancer systems biology. In 2014, he joined the Department of Biology at LUMS where he established the Biomedical Informatics Research Laboratory (BIRL) which is now involved in the development of cutting edge techniques and software for applications in computational proteomics, systems biology and mobile health.

For more information on his research group, please visit Biomedical Informatics Research Laboratory (BIRL).

ATLANTIS - Attractor Landscape Analysis Toolbox for Cell Fate Discovery and ReprogrammingScientific ReportsShah O.S., Chaudhary M.F.A., Awan H.A., Fatima F., Arshad Z., Amina B., Ahmed M., Hameed H., Furqan M., Khalid S., Faisal A., Chaudhary S.U.2018
Reduced metabolites of nitroaromatics are distributed in the environment via the food chainJournal of Hazardous MaterialsNisar N., Cheema K.J., Powell G., Bennett M., Chaudhary S.U., Qadri R., Yang Y., Azam M., Rossiter J.T.2018
Evolution of efficacious pangenotypic hepatitis C virus therapiesMedicinal Research ReviewsAshraf M.U., Iman K., Khalid M.F., Salman H.M., Shafi T., Rafi M., Javaid N., Hussain R., Ahmad F., Shahzad-Ul-Hussan S., Mirza S., Shafiq M., Afzal S., Hamera S., Anwar S., Qazi R., Idrees M., Qureshi S.A., Chaudhary S.U.2018
A functional magnetic resonance imaging investigation of visual hallucinations in the human striate cortexBehavioral and Brain FunctionsAbid H., Ahmad F., Lee S.Y., Park H.W., Im D., Ahmad I., Chaudhary S.U.2016
Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thalianaBiology OpenHamera S., Yan Y., Song X., Chaudhary S.U., Murtaza I., Su L., Tariq M., Chen X., Fang R.2016
A novel method for detection of voxels for decision making: An fMRI studyInternational Journal of Imaging Systems and TechnologyAhmad F., Hussain A., Chaudhary S.U., Ahmad I., Ramay S.M.2016
Towards providing full spectrum antenatal health care in low and middle income countriesHEALTHINF 2016 - 9th International Conference on Health Informatics, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016Abubakar M., Bibi A., Hussain R., Bibi Z., Gul A., Bashir Z., Arshad S.N., Uppal M.A., Chaudhary S.U.2016
Starvation-Induced Dietary Behaviour in Drosophila melanogaster Larvae and AdultsScientific ReportsAhmad M., Chaudhary S.U., Afzal A.J., Tariq M.2015
A slice-wise latent structure regression method for the analysis of functional magnetic resonance imaging dataConcepts in Magnetic Resonance Part A: Bridging Education and ResearchFayyaz A., Chaudhary S.U., Kim S.-H., Park H.2013
ELECANS - An integrated model development environment for multiscale cancer systems biologyBioinformaticsChaudhary S.U., Shin S.-Y., Lee D., Song J.-H., Cho K.-H.2013
Multiscale modeling of tumorigenesis induced by mitochondrial incapacitation in cell deathIEEE Transactions on Biomedical EngineeringChaudhary S.U., Shin S.-Y., Won J.-K., Cho K.-H.2011
Computational strategies for protein quantitation in 2D electrophoresis gel image processor for matlabProceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007Ijaz U.Z., Chaudhary S.U., Don M.S., Kim K.Y.2007