Faculty Profile

Dr. Safee Ullah Chaudhary

Assistant Professor

Biology

Safee Ullah Chaudhary received his B.S. in computer systems engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He spent the next four years at Ultimus Inc (HQ NC) serving in the software development group. He was the team leader for design and development of Ultimus XML Formula Engine. He then proceeded to South Korea for graduate studies and obtained an M.S. and Ph.D. in 2008 and 2013, respectively. His doctoral research at the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), was focused on computational modelling of multiscale cancer systems biology. He took an agents-based (multi-agent) approach to model tumorigenesis and uncovered the role of cell death in Warburg Effect. This work also led to the development of Electronic Cancer System (ELECANS), which is a next-generation modelling platform for applications in cancer systems biology. In 2014, he joined the Department of Biology at LUMS where he established the Biomedical Informatics Research Laboratory (BIRL) which is now involved in the development of cutting edge techniques and software for applications in computational proteomics, systems biology and mobile health.

For more information on his research group, please visit Biomedical Informatics Research Laboratory (BIRL).

    • Article
      • Chaudhary, S. U. .(1999). Multiscale modeling of tumorigenesis induced by mitochondrial incapacitation in cell death . ,
      • Chaudhary, S. U. .(1999). Computational strategies for protein quantitation in 2D electrophoresis gel image processor for MATLAB . ,
      • Chaudhary, S. U. .(1999). A Dynamically Controlled Broadcasting Scheme for VANETs in Dense Traffic Environments . ,
      • Chaudhary, S. U. .(1999). 2D electrophoresis gel image processor for Matlab . ,
      • Chaudhary, S. U. .(1999). A novel method for detection of voxels for decision making: An fMRI study . ,
      • Chaudhary, S. U. .(1999). Towards Providing Full Spectrum Antenatal Health Care in Low and Middle Income Countries . ,
      • Chaudhary, S. U. .(1999). Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana . ,
      • Chaudhary, S. U. .(1999). Starvation-Induced Dietary Behaviour in Drosophila melanogaster Larvae and Adults . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device using compiler embedded there within . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device with high expandability . ,
      • Chaudhary, S. U. .(1999). A slice-wise latent structure regression method for the analysis of functional magnetic resonance imaging data . ,
      • Chaudhary, S. U. .(1999). [Abstract HA-0150] Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics . ,
    • Journal Articles
      • Chaudhary, S. U. .(2013). A slice-wise latent structure regression method for analysis of functional magnetic resonance imaging data . F. Ahmad, S. U. Chaudhary, S. Kim, and H. Park , Concepts in Magnetic Resonance Part A , pp. 130-139
      • Chaudhary, S. U. .(2013). ELECANS-An Integrated Model Development Environment for Multiscale Cancer Systems Biology . S. U. Chaudhary, S.-Y. Shin, D. W. Lee, J.-H. Song and K.-H. Cho , Bioinformatics , pp. 957-959
      • Chaudhary, S. U. .(2011). Multi-Scale Modeling of Tumorigenesis Induced by Mitochondrial Incapacitation in Cell Death . S. U. Chaudhary, S.-Y. Shin, J.-K. Won, K.-H. Cho , IEEE Transactions on Biomedical Engineering , pp. 3028-3032
    • Newsletter
      • Chaudhary, S. U. .(2013). ELECANS-An integrated model development environment for multiscale cancer systems biology . Chaudhary, S. U., Shin, S.-Y., Lee, D., Song, J.-H., and Cho, K.-H. , World Biomedical Frotiers
    • Patent
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device using compiler embedded there within - Korea Patent No. 10-2013-0033837 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device with high expandability - Korea Patent No. 10-2013-0033839 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
SemesterTitleCode
Fall Semester 2017-18Master's Thesis1701
Fall Semester 2017-18Senior Project1701
Fall Semester 2017-18Advanced Biostatistics1701
Fall Semester 2017-18Doctoral Thesis Research1701
Fall Semester 2017-18Biostatistics1701
Fall Semester 2017-18Computational Biology II1701
Summer Semester 2016-17Doctoral Thesis Research1603
Spring Semester 2016-17Topics in Systems Biology1602
Spring Semester 2016-17Doctoral Thesis Research1602
Spring Semester 2016-17Doctoral Thesis Research1602
Spring Semester 2016-17Directed Research Project1602
Spring Semester 2016-17Systems Biology1602
Spring Semester 2016-17Computational Biology I1602
Spring Semester 2016-17Senior Project II1602
Spring Semester 2016-17Senior Project II1602
Fall Semester 2016-17Directed Research Project1601
Fall Semester 2016-17Doctoral Thesis Research1601
Fall Semester 2016-17Directed Research Project1601
Fall Semester 2016-17Computational Problem Solving1601
Fall Semester 2016-17Computational Biology II1601
Fall Semester 2016-17Senior Project I1601
Fall Semester 2016-17Senior Project I1601
Summer Semester 2015-16Doctoral Thesis Research1503
Spring Semester 2015-16Directed Research Project1502
Spring Semester 2015-16Doctoral Thesis Research1502
Spring Semester 2015-16Directed Research Project1502
Spring Semester 2015-16Computational Biology I1502
Spring Semester 2015-16Senior Project II1502
Fall Semester 2015-16Doctoral Thesis Research1501
Fall Semester 2015-16Protein Informatics1501
Fall Semester 2015-16Computational Proteomics1501
Fall Semester 2015-16Directed Research Project1501
Fall Semester 2015-16Computational Biology II1501
Fall Semester 2015-16Senior Project II1501
Fall Semester 2015-16Senior Project I1501
Summer Semester 2014-15Senior Project I1403
Spring Semester 2014-15Computational Biology I1402
Spring Semester 2014-15Biology Laboratory1402
Spring Semester 2014-15Senior Project II1402
Spring Semester 2014-15Seminar in Biology-II1402
Spring Semester 2014-15Senior Project I1402
Spring Semester 2014-15Independent Study1402
Spring Semester 2014-15Senior Project II1402
Fall Semester 2014-15Protein Informatics1401
Fall Semester 2014-15Computational Biology II1401
Fall Semester 2014-15Senior Project I1401
Fall Semester 2014-15Senior Project I1401
  • Past Courses
    SemesterTitleCode
    Spring Semester 2013-14Computational Biology I1302