Faculty Profile

Dr. Safee Ullah Chaudhary

Assistant Professor

Department Of Biology

Safee Ullah Chaudhary received his B.S. in computer systems engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He spent the next four years at Ultimus Inc (HQ NC) serving in the software development group. He was the team leader for design and development of Ultimus XML Formula Engine. He then proceeded to South Korea for graduate studies and obtained an M.S. and Ph.D. in 2008 and 2013, respectively. His doctoral research at the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), was focused on computational modelling of multiscale cancer systems biology. He took an agents-based (multi-agent) approach to model tumorigenesis and uncovered the role of cell death in Warburg Effect. This work also led to the development of Electronic Cancer System (ELECANS), which is a next-generation modelling platform for applications in cancer systems biology. In 2014, he joined the Department of Biology at LUMS where he established the Biomedical Informatics Research Laboratory (BIRL) which is now involved in the development of cutting edge techniques and software for applications in computational proteomics, systems biology and mobile health.

For more information on his research group, please visit Biomedical Informatics Research Laboratory (BIRL).

    • Article
      • Chaudhary, S. U. .(1999). Multiscale modeling of tumorigenesis induced by mitochondrial incapacitation in cell death . ,
      • Chaudhary, S. U. .(1999). Computational strategies for protein quantitation in 2D electrophoresis gel image processor for MATLAB . ,
      • Chaudhary, S. U. .(1999). A Dynamically Controlled Broadcasting Scheme for VANETs in Dense Traffic Environments . ,
      • Chaudhary, S. U. .(1999). 2D electrophoresis gel image processor for Matlab . ,
      • Chaudhary, S. U. .(1999). A novel method for detection of voxels for decision making: An fMRI study . ,
      • Chaudhary, S. U. .(1999). Towards Providing Full Spectrum Antenatal Health Care in Low and Middle Income Countries . ,
      • Chaudhary, S. U. .(1999). Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana . ,
      • Chaudhary, S. U. .(1999). Starvation-Induced Dietary Behaviour in Drosophila melanogaster Larvae and Adults . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device using compiler embedded there within . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device with high expandability . ,
      • Chaudhary, S. U. .(1999). A slice-wise latent structure regression method for the analysis of functional magnetic resonance imaging data . ,
      • Chaudhary, S. U. .(1999). [Abstract HA-0150] Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics . ,
    • Journal Articles
      • Chaudhary, S. U. .(2013). A slice-wise latent structure regression method for analysis of functional magnetic resonance imaging data . F. Ahmad, S. U. Chaudhary, S. Kim, and H. Park , Concepts in Magnetic Resonance Part A , pp. 130-139
      • Chaudhary, S. U. .(2013). ELECANS-An Integrated Model Development Environment for Multiscale Cancer Systems Biology . S. U. Chaudhary, S.-Y. Shin, D. W. Lee, J.-H. Song and K.-H. Cho , Bioinformatics , pp. 957-959
      • Chaudhary, S. U. .(2011). Multi-Scale Modeling of Tumorigenesis Induced by Mitochondrial Incapacitation in Cell Death . S. U. Chaudhary, S.-Y. Shin, J.-K. Won, K.-H. Cho , IEEE Transactions on Biomedical Engineering , pp. 3028-3032
    • Newsletter
      • Chaudhary, S. U. .(2013). ELECANS-An integrated model development environment for multiscale cancer systems biology . Chaudhary, S. U., Shin, S.-Y., Lee, D., Song, J.-H., and Cho, K.-H. , World Biomedical Frotiers
    • Patent
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device using compiler embedded there within - Korea Patent No. 10-2013-0033837 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device with high expandability - Korea Patent No. 10-2013-0033839 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
Semester Title Code
Spring Semester 2017-18 Senior Project 1702
Spring Semester 2017-18 Topics in Systems Biology 1702
Spring Semester 2017-18 Doctoral Thesis Research 1702
Spring Semester 2017-18 Protein Informatics 1702
Spring Semester 2017-18 Computational Proteomics 1702
Spring Semester 2017-18 Systems Biology 1702
Fall Semester 2017-18 Master's Thesis 1701
Fall Semester 2017-18 Senior Project 1701
Fall Semester 2017-18 Advanced Biostatistics 1701
Fall Semester 2017-18 Doctoral Thesis Research 1701
Fall Semester 2017-18 Biostatistics 1701
Fall Semester 2017-18 Computational Biology II 1701
Summer Semester 2016-17 Doctoral Thesis Research 1603
Spring Semester 2016-17 Topics in Systems Biology 1602
Spring Semester 2016-17 Doctoral Thesis Research 1602
Spring Semester 2016-17 Doctoral Thesis Research 1602
Spring Semester 2016-17 Directed Research Project 1602
Spring Semester 2016-17 Systems Biology 1602
Spring Semester 2016-17 Computational Biology I 1602
Spring Semester 2016-17 Senior Project II 1602
Spring Semester 2016-17 Senior Project II 1602
Fall Semester 2016-17 Directed Research Project 1601
Fall Semester 2016-17 Doctoral Thesis Research 1601
Fall Semester 2016-17 Directed Research Project 1601
Fall Semester 2016-17 Computational Problem Solving 1601
Fall Semester 2016-17 Computational Biology II 1601
Fall Semester 2016-17 Senior Project I 1601
Fall Semester 2016-17 Senior Project I 1601
Summer Semester 2015-16 Doctoral Thesis Research 1503
Spring Semester 2015-16 Directed Research Project 1502
Spring Semester 2015-16 Doctoral Thesis Research 1502
Spring Semester 2015-16 Directed Research Project 1502
Spring Semester 2015-16 Computational Biology I 1502
Spring Semester 2015-16 Senior Project II 1502
Fall Semester 2015-16 Doctoral Thesis Research 1501
Fall Semester 2015-16 Protein Informatics 1501
Fall Semester 2015-16 Computational Proteomics 1501
Fall Semester 2015-16 Directed Research Project 1501
Fall Semester 2015-16 Computational Biology II 1501
Fall Semester 2015-16 Senior Project II 1501
Fall Semester 2015-16 Senior Project I 1501
Summer Semester 2014-15 Senior Project I 1403
Spring Semester 2014-15 Computational Biology I 1402
Spring Semester 2014-15 Biology Laboratory 1402
Spring Semester 2014-15 Senior Project II 1402
Spring Semester 2014-15 Seminar in Biology-II 1402
Spring Semester 2014-15 Senior Project I 1402
Spring Semester 2014-15 Independent Study 1402
Spring Semester 2014-15 Senior Project II 1402
Fall Semester 2014-15 Protein Informatics 1401
Fall Semester 2014-15 Computational Biology II 1401
Fall Semester 2014-15 Senior Project I 1401
Fall Semester 2014-15 Senior Project I 1401
  • Past Courses
    Semester Title Code
    Spring Semester 2013-14 Computational Biology I 1302