Faculty Profile

Dr. Safee Ullah Chaudhary

Assistant Professor

Department Of Biology

Safee Ullah Chaudhary received his Ph.D. in 2013 from the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), South Korea. His research was focussed on the computational modelling of multiscale cancer systems biology. He took an agents-based (multi-agent) approach to model tumorigenesis as described in the Warburg Effect. His work also led to the development of Electronic Cancer System (ELECANS), which is a next-generation modelling platform for applications in cancer systems biology. In 2014, he joined the Department of Biology at LUMS where he is involved in the development of a GPU-based cancer modelling and simulation pipeline by leveraging the CUDA Toolkit. He is also keenly interested in investigating the oncological manifestations of the Warburg Effect during cell death.

For more information on his research group, please visit Biomedical Informatics Research Laboratory (BIRL).

    • Article
      • Chaudhary, S. U. .(1999). Multiscale modeling of tumorigenesis induced by mitochondrial incapacitation in cell death . ,
      • Chaudhary, S. U. .(1999). Computational strategies for protein quantitation in 2D electrophoresis gel image processor for MATLAB . ,
      • Chaudhary, S. U. .(1999). A Dynamically Controlled Broadcasting Scheme for VANETs in Dense Traffic Environments . ,
      • Chaudhary, S. U. .(1999). 2D electrophoresis gel image processor for Matlab . ,
      • Chaudhary, S. U. .(1999). A novel method for detection of voxels for decision making: An fMRI study . ,
      • Chaudhary, S. U. .(1999). Towards Providing Full Spectrum Antenatal Health Care in Low and Middle Income Countries . ,
      • Chaudhary, S. U. .(1999). Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana . ,
      • Chaudhary, S. U. .(1999). Starvation-Induced Dietary Behaviour in Drosophila melanogaster Larvae and Adults . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device using compiler embedded there within . ,
      • Chaudhary, S. U. .(1999). Biosimulation method and computing device with high expandability . ,
      • Chaudhary, S. U. .(1999). A slice-wise latent structure regression method for the analysis of functional magnetic resonance imaging data . ,
      • Chaudhary, S. U. .(1999). [Abstract HA-0150] Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics . ,
    • Journal Articles
      • Chaudhary, S. U. .(2013). A slice-wise latent structure regression method for analysis of functional magnetic resonance imaging data . F. Ahmad, S. U. Chaudhary, S. Kim, and H. Park , Concepts in Magnetic Resonance Part A , pp. 130-139
      • Chaudhary, S. U. .(2013). ELECANS-An Integrated Model Development Environment for Multiscale Cancer Systems Biology . S. U. Chaudhary, S.-Y. Shin, D. W. Lee, J.-H. Song and K.-H. Cho , Bioinformatics , pp. 957-959
      • Chaudhary, S. U. .(2011). Multi-Scale Modeling of Tumorigenesis Induced by Mitochondrial Incapacitation in Cell Death . S. U. Chaudhary, S.-Y. Shin, J.-K. Won, K.-H. Cho , IEEE Transactions on Biomedical Engineering , pp. 3028-3032
    • Newsletter
      • Chaudhary, S. U. .(2013). ELECANS-An integrated model development environment for multiscale cancer systems biology . Chaudhary, S. U., Shin, S.-Y., Lee, D., Song, J.-H., and Cho, K.-H. , World Biomedical Frotiers
    • Patent
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device using compiler embedded there within - Korea Patent No. 10-2013-0033837 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
      • Chaudhary, S. U. .(2014). Biosimulation method and computing device with high expandability - Korea Patent No. 10-2013-0033839 . K.-H. Cho, S. U. Chaudhary, D. Lee , Korea Patent Office
TitleSemesterCode
Senior Project IFall Semester 2014-151401
Senior Project IFall Semester 2014-151401
Computational Biology IIFall Semester 2014-151401
Protein InformaticsFall Semester 2014-151401
Senior Project IISpring Semester 2014-151402
Independent StudySpring Semester 2014-151402
Senior Project ISpring Semester 2014-151402
Seminar in Biology-IISpring Semester 2014-151402
Senior Project IISpring Semester 2014-151402
Biology LaboratorySpring Semester 2014-151402
Computational Biology ISpring Semester 2014-151402
Senior Project ISummer Semester 2014-151403
Senior Project IFall Semester 2015-161501
Senior Project IIFall Semester 2015-161501
Computational Biology IIFall Semester 2015-161501
Directed Research ProjectFall Semester 2015-161501
Computational ProteomicsFall Semester 2015-161501
Protein InformaticsFall Semester 2015-161501
Doctoral Thesis ResearchFall Semester 2015-161501
Senior Project IISpring Semester 2015-161502
Computational Biology ISpring Semester 2015-161502
Directed Research ProjectSpring Semester 2015-161502
Doctoral Thesis ResearchSpring Semester 2015-161502
Senior ProjectSpring Semester 2015-161502
Doctoral Thesis ResearchSummer Semester 2015-161503
Senior Project IFall Semester 2016-171601
Senior Project IFall Semester 2016-171601
Computational Biology IIFall Semester 2016-171601
Computational Problem SolvingFall Semester 2016-171601
Directed Research ProjectFall Semester 2016-171601
Doctoral Thesis ResearchFall Semester 2016-171601
Directed Research ProjectFall Semester 2016-171601
Senior Project IISpring Semester 2016-171602
Senior Project IISpring Semester 2016-171602
Computational Biology ISpring Semester 2016-171602
Systems BiologySpring Semester 2016-171602
Directed Research ProjectSpring Semester 2016-171602
Doctoral Thesis ResearchSpring Semester 2016-171602
Doctoral Thesis ResearchSpring Semester 2016-171602
Topics in Systems BiologySpring Semester 2016-171602
  • Past Courses
    TitleSemesterCode
    Computational Biology ISpring Semester 2013-141302